Basic Information
Locus ID:
BH03.3600
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 44847196 | 44860055 | - | BH03.3600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 145,726.88 Da | 49.07 | 82.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 444 | 506 | 7.61676E-18 | IPR002048 |
| CDD | cd15898 | EFh_PI-PLC | 373 | 505 | 7.84269E-16 | - |
| CDD | cd05117 | STKc_CAMK | 66 | 324 | 1.36044E-134 | - |
| Pfam | PF03134 | TB2/DP1, HVA22 family | 1150 | 1226 | 3.7E-22 | IPR004345 |
| Pfam | PF16166 | Chloroplast import apparatus Tic20-like | 864 | 1025 | 1.6E-63 | IPR005691 |
| Pfam | PF13499 | EF-hand domain pair | 443 | 506 | 3.5E-14 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 391 | 435 | 1.3E-4 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 67 | 325 | 5.8E-75 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 326 | 3.78E-87 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 353 | 531 | 1.19E-40 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 70 | 152 | 2.1E-27 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 334 | 508 | 9.2E-49 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 153 | 333 | 1.0E-58 | - |
| SMART | SM00054 | efh_1 | 372 | 400 | 0.011 | IPR002048 |
| SMART | SM00054 | efh_1 | 444 | 472 | 0.092 | IPR002048 |
| SMART | SM00220 | serkin_6 | 67 | 325 | 1.2E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 408 | 436 | 1.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 480 | 508 | 1.2E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 476 | 511 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 67 | 325 | 49.148876 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 440 | 475 | 12.477041 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 404 | 439 | 8.766953 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 368 | 403 | 13.034948 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 489 | 501 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 73 | 96 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 417 | 429 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 453 | 465 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 187 | 199 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 381 | 393 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1277 | 1307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 641 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12480.1 | calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | 8.23E-276 |
| RefSeq | XP_025802338.1 | calcium-dependent protein kinase 20 [Panicum hallii] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811NEW9 | Calcium-dependent protein kinase 30 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS15857 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19703 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23093, gene_3558 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023453 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_1g006900, BVRB_1g009210, BVRB_6g143840, BVRB_6g147420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg28779, Sbi_jg3173, Sbi_jg42240, Sbi_jg44816 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg27292, Seu_jg6737 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000037, GOSA_00002538 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11579, Sgl16949, Sgl17076, Sgl35148, Sgl40527 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001196, gene:ENSEOMG00000014098 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0008740, CQ.Regalona.r1.1BG0017130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019340, pistato.v30046900 |
| Apiaceae | Apium graveolens | 1 | Ag5G01126 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G009900, COCNU_12G004160, scaffold011195G000040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708044, gene-LOC103709930, gene-LOC103718687 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.2768.V1.1, AsparagusV1_08.2769.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G33853 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04940.1, AT4G03320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026827m.g.v1.0, Thhalv10028869m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03780.v2.2, Sp6g03350.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g045810.2N, BniB08g046130.2N, BniB08g046140.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2546, Ceq03G0991 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2632, Cgl03G1075 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0117s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5733, nbisL1-mrna-5749 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1934 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.2596, BH03.3600, BH07.2413, CH03.3804, CH07.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0192990, gene-QOZ80_7AG0573210 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_023597, gene-QYE76_040447, gene-QYE76_040487 |
| Poaceae | Oryza coarctata | 4 | Oco03G015280, Oco04G015840, Oco13G010390 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g40080.1, LOC_Os07g38110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G319800, gene-BS78_04G195500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204647, Pt_Chr0204660, Pt_Chr0304470 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G007590, Chr09G025920, Chr13G007580, Chr19G004070 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G380900, Tel6E01G429200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG025700, gene_TRIDC2BG030110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G199800.1, TraesCS2B02G227100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb107180_P001, Zm00001eb247090_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10574 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16666, Zma_g5380 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1389, evm.TU.LG12.31 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g07920, gene.Posoc10g07930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1296, evm.TU.Scaffold_9_RagTag.1288 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19030, nbisL1-mrna-20879 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12230, nbisL1-mrna-18106, nbisL1-mrna-8727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21274 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.796, evm.TU.utg000018l.429 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002967, Maker00009928 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1257, nbisL1-mrna-13334 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11145, nbisL1-mrna-4786 |
| Salicaceae | Populus euphratica | 4 | populus_peu15263, populus_peu18680, populus_peu18693 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603139, gene-LOC132627667 |
| Solanaceae | Solanum chilense | 2 | SOLCI000211200, SOLCI003892500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107015647, gene-LOC107017029, gene-LOC107020600 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23487_chr05_-, STRG.5758_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2287 |