Basic Information
Locus ID:
BH03.3596
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
SYMRK
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 44824986 | 44829621 | + | BH03.3596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 70,441.91 Da | 47.78 | 79.59 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 317 | 584 | 2.70602E-98 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 313 | 583 | 1.9E-43 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 295 | 583 | 1.27E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 108 | 205 | 4.57E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 213 | 4.6E-22 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 278 | 386 | 1.2E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 387 | 600 | 1.5E-58 | - |
| SMART | SM00220 | serkin_6 | 311 | 588 | 2.8E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 588 | 34.901806 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 433 | 445 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 317 | 339 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67720.1 | Leucine-rich repeat protein kinase family protein. | 5.94E-90 |
| RefSeq | XP_004958064.1 | nodulation receptor kinase isoform X2 [Setaria italica] | 0 |
| Q8L4H4 | Nodulation receptor kinase OS=Medicago truncatula OX=3880 GN=NORK PE=1 SV=2 | 3.39E-194 | |
| TrEMBL | K3ZRV4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101769420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17317 |
| Apiaceae | Apium graveolens | 3 | Ag4G01225, Ag5G00375, Ag7G00972 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1047.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32454 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0389 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10102 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2655 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030007 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3441, BH03.3596, CH03.3800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0573170, gene-QOZ80_7BG0604470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0133680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040451, gene-QYE76_040484 |
| Poaceae | Oryza coarctata | 2 | Oco13G010350, Oco14G010990 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g38070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G319400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304399, Pt_Chr0304464 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G010420, Chr19G004110, Chr20G009610, Chr24G010410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G381300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025760, gene_TRIDC2BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G200300.1, TraesCS2B02G227700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb324630_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10579, nbis-gene-654 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5375, Zma_g6684 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-828 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1307, nbisL1-mrna-2785 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12038, nbisL1-mrna-2399 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1051, evm.TU.utg000019l.554 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002217 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3356 |
| Salicaceae | Populus euphratica | 1 | populus_peu23775 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623740 |
| Solanaceae | Solanum chilense | 1 | SOLCI000782800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009482 |