Basic Information
Locus ID:
BH03.3423
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
notochord cell vacuolation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 43263209 | 43264657 | + | BH03.3423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 29,369.98 Da | 29.96 | 81.12 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 179 | 259 | 8.1E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 90 | 156 | 4.8E-8 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 84 | 177 | 5.0E-11 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 156 | 263 | 11.483039 | IPR002902 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008667806.1 | uncharacterized protein LOC100279706 isoform X1 [Zea mays] | 1.26E-65 |
| TrEMBL | A0A835BQA9 | Cysteine-rich receptor-like protein kinase 25 OS=Digitaria exilis OX=1010633 GN=HU200_034400 PE=4 SV=1 | 3.58E-68 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3238, BH03.3419, BH03.3423, BH03.3425 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0570310, gene-QOZ80_7BG0602060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0139070.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G009180, Oco14G009600 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G300500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304235 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005290, Chr27G011970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G406000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028920, gene_TRIDC2AG028930 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G217600.1, TraesCS2B02G243100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb106320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6568 |