Basic Information
Locus ID:
BH03.3332
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 42493985 | 42495473 | - | BH03.3332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 13,679.65 Da | 45.22 | 80.25 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 1.88332E-68 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 3.2E-52 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 117 | 2.33E-44 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 117 | 3.9E-59 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62040.1 | Ubiquitin-like superfamily protein. | 3.26E-67 |
| RefSeq | NP_001137492.1 | Autophagy-related protein 8A [Zea mays] | 3.14E-73 |
| Q2XPP5 | Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1 | 2.5E-72 | |
| TrEMBL | A0A3L6QRC1 | Autophagy-related protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G08310 PE=3 SV=1 | 5.0E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology