Basic Information
Locus ID:
BH03.2836
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 37956117 | 37959328 | - | BH03.2836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 78,141.82 Da | 45.90 | 102.41 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 155 | 196 | 9.5E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 446 | 683 | 2.94E-21 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 146 | 197 | 1.16E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 247 | 488 | 3.4E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 498 | 689 | 1.1E-18 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 152 | 188 | 1.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 208 | 496 | 4.9E-32 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 450 | 475 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 335 | 360 | 57.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 637 | 662 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 395 | 420 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 334 | 4.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 258 | 283 | 0.33 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 664 | 689 | 2.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039822875.1 | EIN3-binding F-box protein 1-like isoform X1 [Panicum virgatum] | 1.32E-262 |
| TrEMBL | A0A8T0WF13 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG376300 PE=4 SV=1 | 2.98E-261 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.375.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10740 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.2836 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0482630 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G013880, Chr10G013900, Chr10G013910, Chr11G008410 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG059180 |
| Poaceae | Zea mays | 2 | Zm00001eb241470_P001, Zm00001eb319400_P001 |