Basic Information
Locus ID:
BH03.2807
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A K63-linked deubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 37714211 | 37724714 | - | BH03.2807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 204,211.34 Da | 45.41 | 80.04 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 462 | 641 | 7.54779E-18 | - |
| CDD | cd02257 | Peptidase_C19 | 933 | 1249 | 5.46209E-35 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 460 | 640 | 4.5E-11 | IPR001394 |
| Pfam | PF14551 | MCM N-terminal domain | 1357 | 1435 | 5.5E-7 | IPR027925 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 288 | 355 | 2.2E-8 | IPR001607 |
| Pfam | PF04424 | MINDY deubiquitinase | 700 | 793 | 8.2E-8 | IPR033979 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 932 | 1248 | 1.8E-24 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 930 | 1250 | 1.06E-54 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 261 | 353 | 1.65E-8 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 387 | 644 | 1.12E-20 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 927 | 1254 | 1.3E-54 | - |
| Gene3D | G3DSA:3.30.1640.10 | - | 1348 | 1449 | 4.0E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 380 | 650 | 1.9E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 374 | 2.4E-10 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 932 | 1251 | 32.249603 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 286 | 356 | 12.313799 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 374 | 643 | 18.459198 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1194 | 1212 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 933 | 948 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 31 | - | - |
| Coils | Coil | Coil | 1647 | 1667 | - | - |
| Coils | Coil | Coil | 5 | 35 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021313395.1 | uncharacterized protein LOC110434056 [Sorghum bicolor] | 4.61E-130 |
| Q8NBR6 | Ubiquitin carboxyl-terminal hydrolase MINDY-2 OS=Homo sapiens OX=9606 GN=MINDY2 PE=1 SV=2 | 3.23E-16 | |
| TrEMBL | A0A2K2D643 | NERD domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_3g60968v3 PE=4 SV=1 | 9.85E-188 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH03.2807 |
| Poaceae | Oryza coarctata | 1 | Oco11G005130 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G124200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G517400 |