Basic Information
Locus ID:
BH03.2644
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 36512734 | 36513357 | - | BH03.2644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 21,774.29 Da | 54.90 | 65.36 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 171 | 196 | 5.71918E-6 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 158 | 203 | 7.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 203 | 1.33E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 207 | 1.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 196 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 197 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 174 | 183 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 79 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 6.96E-22 |
| RefSeq | XP_025801629.1 | uncharacterized protein LOC112881152 [Panicum hallii] | 3.73E-69 |
| TrEMBL | K3ZX17 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G264300v2 PE=4 SV=1 | 1.13E-69 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology