Basic Information
Locus ID:
BH03.2623
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A K63-linked deubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 36328779 | 36334416 | - | BH03.2623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 104,529.43 Da | 35.65 | 83.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14551 | MCM N-terminal domain | 663 | 790 | 9.4E-8 | IPR027925 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 110 | 163 | 3.4E-9 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 190 | 528 | 1.9E-19 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 167 | 2.47E-8 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 190 | 530 | 3.53E-43 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 188 | 537 | 5.9E-51 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 176 | 7.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.1640.10 | - | 649 | 745 | 1.6E-5 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 531 | 27.671877 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 96 | 168 | 11.37394 | IPR001607 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 4.61E-19 |
| RefSeq | XP_034600027.1 | uncharacterized protein LOC117860760 isoform X3 [Setaria viridis] | 2.31E-252 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 4.58E-18 | |
| TrEMBL | A0A4U6U0A1 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_6G051400v2 PE=3 SV=1 | 7.76E-251 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||