Basic Information
Locus ID:
BH03.251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 3331712 | 3335448 | - | BH03.251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 115,388.87 Da | 53.72 | 82.34 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 893 | 1029 | 2.89959E-71 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 92 | 288 | 6.0E-39 | IPR001245 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 657 | 802 | 4.7E-37 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 662 | 999 | 3.82E-17 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 375 | 2.19E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 167 | 385 | 2.3E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 166 | 5.8E-21 | - |
| SMART | SM00220 | serkin_6 | 89 | 340 | 8.4E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 89 | 388 | 35.495434 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 95 | 117 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 211 | 223 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34300.1 | lectin protein kinase family protein. | 1.26E-67 |
| RefSeq | XP_039793320.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Panicum virgatum] | 3.68E-236 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 4.07E-137 | |
| TrEMBL | Q2QQ81 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g31920 PE=4 SV=1 | 3.88E-242 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology