Basic Information
Locus ID:
BH03.2483
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
UAS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 35095171 | 35097091 | - | BH03.2483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 43,909.99 Da | 67.74 | 69.34 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 317 | 390 | 9.08832E-21 | - |
| CDD | cd02958 | UAS | 97 | 207 | 8.916E-25 | - |
| Pfam | PF00789 | UBX domain | 311 | 390 | 6.4E-19 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 279 | 391 | 5.68E-24 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 68 | 208 | 8.5E-30 | IPR036249 |
| Gene3D | G3DSA:3.10.20.90 | - | 310 | 391 | 1.5E-21 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 74 | 221 | 1.5E-34 | - |
| SMART | SM00166 | ubx_3 | 308 | 391 | 7.5E-8 | IPR001012 |
| SMART | SM00594 | 45neu3 | 76 | 202 | 1.8E-21 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 311 | 389 | 18.740421 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 269 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10790.1 | UBX domain-containing protein. | 5.75E-40 |
| RefSeq | XP_039795652.1 | plant UBX domain-containing protein 10-like [Panicum virgatum] | 2.12E-190 |
| Q9M0N1 | Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 PE=2 SV=1 | 5.63E-39 | |
| TrEMBL | A0A3L6TD55 | Plant UBX domain-containing protein 10-like OS=Panicum miliaceum OX=4540 GN=C2845_PM03G01200 PE=4 SV=1 | 3.99E-190 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18771, jg25898 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19498 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000570 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30574, Sbi_jg58678 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014917 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55203, Sgl60451 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008172, gene:ENSEOMG00000022399 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023270, CQ.Regalona.r1.5BG0024750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139580 |
| Apiaceae | Apium graveolens | 1 | Ag9G00589 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G006590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722376 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.490.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G26174 |
| Brassicaceae | Brassica nigra | 1 | BniB04g047330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1971 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2158 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0115s00010.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.705 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26684 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2359, BH03.2483, CH03.2677 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0539220, gene-QOZ80_6BG0492540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0489890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006114 |
| Poaceae | Oryza coarctata | 2 | Oco17G007600, Oco18G007880 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30411.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G220700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701625 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G413100 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G258700.1, TraesCS5B02G257600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb316320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32762 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2455, evm.TU.LG02.965, evm.TU.LG09.997 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1046 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12608 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.130 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008466 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-728 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8683 |
| Salicaceae | Populus euphratica | 1 | populus_peu28677 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632625 |
| Solanaceae | Solanum chilense | 1 | SOLCI001700500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012385 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15342 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0974 |