Basic Information
Locus ID:
BH03.2378
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 34115786 | 34116855 | + | BH03.2378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 29,441.55 Da | 55.92 | 65.06 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 242 | 9.9E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 135 | 184 | 3.8E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 189 | 9.06E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 131 | 1.82E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 247 | 2.17E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 190 | 255 | 3.6E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 136 | 1.1E-13 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 190 | 242 | 0.11 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 122 | 189 | 0.026 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 44 | 246 | 17.756992 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 275 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 1.46E-34 |
| RefSeq | XP_022679849.1 | probable E3 ubiquitin-protein ligase ARI9 [Setaria italica] | 1.32E-145 |
| TrEMBL | K3ZW51 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G215600v2 PE=3 SV=1 | 2.98E-144 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.2027, BH03.2378 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481120.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco17G005560, Oco18G005670 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g26460.1, LOC_Os11g38710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG034790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215700.1, TraesCS5B02G214200.1 ... |