Basic Information
Locus ID:
BH03.2377
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 34098218 | 34103804 | + | BH03.2377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 64,493.70 Da | 47.19 | 65.98 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 478 | 520 | 3.8E-7 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 328 | 373 | 9.2E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 325 | 381 | 1.25E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 475 | 522 | 2.83E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 473 | 548 | 4.3E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 414 | 7.1E-19 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 402 | 468 | 2.2E-4 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 476 | 534 | 0.18 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 373 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 324 | 540 | 24.031395 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 346 | 355 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 1.01E-27 |
| RefSeq | XP_025801584.1 | probable E3 ubiquitin-protein ligase RNF217 [Panicum hallii] | 4.73E-198 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 8.65E-23 | |
| TrEMBL | A0A2T8KQM7 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G275000 PE=3 SV=1 | 5.27E-190 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |