Basic Information
Locus ID:
BH03.2317
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 33622083 | 33627076 | + | BH03.2317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 84,835.06 Da | 48.83 | 76.65 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 271 | 478 | 9.3E-39 | IPR000719 |
| Pfam | PF08612 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | 539 | 749 | 8.4E-39 | IPR013921 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 257 | 482 | 5.66E-61 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 261 | 349 | 1.8E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 350 | 491 | 3.9E-39 | - |
| SMART | SM00220 | serkin_6 | 269 | 628 | 8.8E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 269 | 629 | 34.590858 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 275 | 296 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 398 | 410 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 156 | - | - |
| Coils | Coil | Coil | 152 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28230.1 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex. | 2.41E-77 |
| RefSeq | XP_039795383.1 | serine/threonine/tyrosine-protein kinase HT1-like [Panicum virgatum] | 2.03E-194 |
| Q6NPF4 | Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana OX=3702 GN=MED20A PE=1 SV=1 | 2.32E-76 | |
| TrEMBL | A0A1E5UQF8 | Putative serine/threonine-protein kinase drkC OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0023938 PE=3 SV=1 | 4.72E-201 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36628 |
| Apiaceae | Apium graveolens | 1 | Ag9G02583 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704884, gene-LOC120111673 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.457.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G28597 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0085s00026.v1.0, Dusal.0969s00006.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-224 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.675 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013409 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2096, BH03.2317, CH03.2403 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536660, gene-QOZ80_6BG0489970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0479880.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005471, gene-QYE76_005474 |
| Poaceae | Oryza coarctata | 2 | Oco17G005970, Oco18G006060 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G197500 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G008970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G344700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG033540, gene_TRIDC5BG035380 |
| Poaceae | Zea mays | 1 | Zm00001eb100280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19744 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32624 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.674 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13819, nbisL1-mrna-25870 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8905 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8924 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.477 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014563 |
| Salicaceae | Populus euphratica | 1 | populus_peu12594 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027716 |