halophFGD

Basic Information

Locus ID: BH03.2184

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: DNA binding domain with preference for A/T rich regions

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH03	32177426	32178811	-	BH03.2184

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.04	48,256.42 Da	71.39	61.58	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06257	DnaJ	75	135	2.53253E-5	IPR001623
SUPERFAMILY	SSF46565	Chaperone J-domain	68	144	1.11E-6	IPR036869
Gene3D	G3DSA:1.10.287.110	DnaJ domain	61	162	2.4E-6	IPR036869
ProSiteProfiles	PS50076	dnaJ domain profile.	75	146	8.901089	IPR001623
PRINTS	PR01217	Proline rich extensin signature	166	182	1.0E-12	-
PRINTS	PR01217	Proline rich extensin signature	189	201	1.0E-12	-
PRINTS	PR01217	Proline rich extensin signature	202	223	1.0E-12	-
PRINTS	PR01217	Proline rich extensin signature	229	245	1.0E-12	-
MobiDBLite	mobidb-lite	consensus disorder prediction	173	255	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	443	461	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	159	298	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	437	461	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	263	298	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_004957058.1	proline-rich extensin-like protein EPR1 [Setaria italica]	2.09E-185
TrEMBL	A0A368Q479	J domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G235300v2 PE=4 SV=1	4.72E-184

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg10785, jg1241, jg26355, jg28521, jg30157
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1487, gene_24169, gene_26325
Amaranthaceae	Atriplex hortensis	3	Ah009359, Ah023699, Ah027185
Amaranthaceae	Beta vulgaris	3	BVRB_1g007700, BVRB_6g133630, BVRB_9g221560
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg10824, Sbi_jg12559, Sbi_jg4179, Sbi_jg47492 ... Sbi_jg49623, Sbi_jg53377
Amaranthaceae	Salicornia europaea	3	Seu_jg21723, Seu_jg5626, Seu_jg8551
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001033, GOSA_00010461, GOSA_00018734
Amaranthaceae	Suaeda glauca	6	Sgl10585, Sgl15836, Sgl33698, Sgl39009, Sgl55635, Sgl61363
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001550, gene:ENSEOMG00000003449 ... gene:ENSEOMG00000014309, gene:ENSEOMG00000018380, gene:ENSEOMG00000026496, gene:ENSEOMG00000033084, gene:ENSEOMG00000036690, gene:ENSEOMG00000047684, gene:ENSEOMG00000052878
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0010550, CQ.Regalona.r1.1BG0015310 ... CQ.Regalona.r1.7BG0001440, CQ.Regalona.r1.9AG0022990
Anacardiaceae	Pistacia vera	1	pistato.v30102670
Apiaceae	Apium graveolens	9	Ag10G02856, Ag1G00309, Ag1G00677, Ag2G00495, Ag3G00071 ... Ag3G00281, Ag4G02511, Ag6G02916, Ag8G00938
Arecaceae	Cocos nucifera	3	COCNU_03G007530, scaffold004000G000010 ... scaffold008606G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103701801, gene-LOC103710987, gene-LOC103718691
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1903.V1.1, AsparagusV1_07.1196.V1.1
Asteraceae	Flaveria trinervia	3	Ftri1G20815, Ftri6G03081, FtriNA22549
Brassicaceae	Arabidopsis thaliana	3	AT2G01710.1, AT5G09540.1, AT5G64360.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10004095m.g.v1.0, Thhalv10005716m.g.v1.0 ... Thhalv10015443m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g13160.v2.2, Sp2g27450.v2.2, Sp6g33810.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052210.2N, BniB04g001370.2N, BniB04g009490.2N ... BniB06g005100.2N, BniB06g012560.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G0600
Casuarinaceae	Casuarina glauca	2	Cgl05G0066, Cgl09G0639
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g02320, gene.Cymno04g09420, gene.Cymno05g10260 ... gene.Cymno05g10290, gene.Cymno05g10310, gene.Cymno05g10330, gene.Cymno05g10340
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g09080, gene.Thate05g11450, gene.Thate06g16530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-1156, nbisL1-mrna-5709, nbisL1-mrna-9411
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.218, evm.TU.LG08.730
Plantaginaceae	Plantago ovata	7	Pov_00002154, Pov_00002965, Pov_00026377, Pov_00026379 ... Pov_00030994, Pov_00037180, Pov_00039753
Plumbaginaceae	Limonium bicolor	5	Lb1G05860, Lb2G12106, Lb3G15518, Lb3G15519, Lb3G19215
Poaceae	Echinochloa crus-galli	15	AH01.3410, AH01.4601, AH03.3727, AH03.3729, AH08.1833 ... BH01.1692, BH01.2654, BH01.3763, BH03.2184, BH03.4005, CH01.2841, CH01.4006, CH03.2547, CH03.4274, CH08.2099
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2BG0177910, gene-QOZ80_3AG0251020 ... gene-QOZ80_3BG0277310, gene-QOZ80_6AG0538020, gene-QOZ80_6BG0491240, gene-QOZ80_7AG0577540, gene-QOZ80_7BG0608890, gene-QOZ80_8AG0634480, gene-QOZ80_8BG0663430
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0038720.1.CDS1 ... HORVU.MOREX.r3.2HG0124170.1.CDS1, HORVU.MOREX.r3.4HG0370060.1.CDS1, HORVU.MOREX.r3.5HG0487540.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_039476, gene-QYE76_067486
Poaceae	Oryza coarctata	8	Oco05G015160, Oco06G015620, Oco13G012910, Oco14G013610 ... Oco15G012650, Oco16G009950, Oco17G006880, Oco18G007040
Poaceae	Oryza sativa	5	LOC_Os01g51560.1, LOC_Os03g27460.2, LOC_Os07g42800.1 ... LOC_Os08g37270.1, LOC_Os10g23230.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G239800, gene-BS78_01G333900 ... gene-BS78_02G208500, gene-BS78_02G353000, gene-BS78_07G166500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0701809, Pt_Chr0701842
Poaceae	Sporobolus alterniflorus	14	Chr01G024880, Chr04G012800, Chr07G012230, Chr0G028100 ... Chr0G028960, Chr13G016920, Chr14G015440, Chr15G016980, Chr19G002090, Chr20G003990, Chr21G014480, Chr27G015150, Chr28G011880, Chr29G003810
Poaceae	Thinopyrum elongatum	6	Tel1E01G261400, Tel2E01G325100, Tel4E01G161000 ... Tel4E01G255700, Tel4E01G262300, Tel5E01G394600
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG021090, gene_TRIDC2AG020890 ... gene_TRIDC2BG024830, gene_TRIDC4AG024940, gene_TRIDC4BG026560, gene_TRIDC5AG038470, gene_TRIDC5BG040550
Poaceae	Triticum aestivum	11	TraesCS1A02G141000.1.cds1, TraesCS1D02G139900.1.cds1 ... TraesCS2A02G165100.1.cds1, TraesCS2B02G191300.1.cds1, TraesCS2D02G172200.1.cds1, TraesCS4A02G160900.1.cds1, TraesCS4B02G160100.1.cds1, TraesCS4D02G156000.1.cds1, TraesCS5A02G245400.1.cds1, TraesCS5B02G242900.1, TraesCS5D02G252200.1.cds1
Poaceae	Zea mays	7	Zm00001eb019140_P001, Zm00001eb027890_P001 ... Zm00001eb221380_P001, Zm00001eb315320_P001, Zm00001eb327710_P001, Zm00001eb390520_P001, Zm00001eb392490_P001
Poaceae	Zoysia japonica	8	nbis-gene-12031, nbis-gene-19630, nbis-gene-27773 ... nbis-gene-348, nbis-gene-36397, nbis-gene-52208, nbis-gene-55140, nbis-gene-57235
Poaceae	Zoysia macrostachya	7	Zma_g1075, Zma_g13141, Zma_g24234, Zma_g32693, Zma_g3505 ... Zma_g5570, Zma_g6873
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.278, evm.TU.LG08.1093, evm.TU.LG22.835 ... evm.TU.LG25.1037
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g22500, gene.Posoc02g06540, gene.Posoc02g30170
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.1940, evm.TU.Scaffold_2_RagTag.502 ... evm.TU.Scaffold_3_RagTag.1111, evm.TU.Scaffold_7_RagTag.921, evm.TU.Scaffold_8_RagTag.820
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-19386, nbisL1-mrna-25548, nbisL1-mrna-4691 ... nbisL1-mrna-5725, nbisL1-mrna-873, nbisL1-mrna-9420
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18072, nbisL1-mrna-2057, nbisL1-mrna-4921 ... nbisL1-mrna-9469
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-2363, nbisL1-mrna-3585, nbisL1-mrna-6752 ... nbisL1-mrna-9676
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000002l.271, add.evm.TU.utg000009l.233 ... add.evm.TU.utg000016l.128, add.evm.TU.utg000019l.250
Rhizophoraceae	Kandelia obovata	2	Maker00005834, Maker00010420
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17761, nbisL1-mrna-18668, nbisL1-mrna-19216 ... nbisL1-mrna-21294, nbisL1-mrna-22013
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10168, nbisL1-mrna-13883, nbisL1-mrna-16577 ... nbisL1-mrna-17042
Salicaceae	Populus euphratica	3	populus_peu22731, populus_peu24160, populus_peu32181
Solanaceae	Lycium barbarum	4	gene-LOC132598829, gene-LOC132603079, gene-LOC132614970 ... gene-LOC132627623
Solanaceae	Solanum chilense	5	SOLCI000739800, SOLCI000787100, SOLCI000787700 ... SOLCI002660000, SOLCI005950300
Solanaceae	Solanum pennellii	6	gene-LOC107003571, gene-LOC107004265, gene-LOC107004656 ... gene-LOC107004657, gene-LOC107008371, gene-LOC107026304
Tamaricaceae	Reaumuria soongarica	4	MSTRG.3092_chr02_-, STRG.5911_chr02_-, STRG.9806_chr06_+ ... gene_11317
Tamaricaceae	Tamarix chinensis	5	TC03G3023, TC09G0197, TC09G2505, TC10G0563, TC12G0632
Zosteraceae	Zostera marina	3	Zosma01g08870.v3.1, Zosma01g29390.v3.1, Zosma02g19340.v3.1