Basic Information
Locus ID:
BH03.1997
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 30181890 | 30184390 | - | BH03.1997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 90,036.76 Da | 52.78 | 70.30 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 672 | 721 | 3.8E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 220 | 269 | 1.6E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 446 | 495 | 2.5E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 447 | 500 | 6.36E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 732 | 767 | 6.67E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 214 | 1.77E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 585 | 666 | 1.77E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 672 | 726 | 2.58E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 357 | 440 | 2.22E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 274 | 4.24E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 582 | 670 | 5.7E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 355 | 446 | 6.8E-23 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 220 | 9.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 362 | 409 | 0.14 | IPR001841 |
| SMART | SM00184 | ring_2 | 136 | 183 | 0.12 | IPR001841 |
| SMART | SM00184 | ring_2 | 588 | 635 | 0.22 | IPR001841 |
| SMART | SM00184 | ring_2 | 34 | 80 | 0.98 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 205 | 269 | 2.0E-12 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 657 | 721 | 2.4E-10 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 431 | 495 | 2.1E-8 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 362 | 407 | 9.656702 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 588 | 633 | 10.04028 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 181 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 584 | 802 | 19.650829 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 386 | 17.26647 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 380 | 389 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 606 | 615 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 154 | 163 | - | IPR017907 |
| Coils | Coil | Coil | 498 | 518 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 1.26E-58 |
| RefSeq | XP_004956836.1 | uncharacterized protein LOC101753869 [Setaria italica] | 0 |
| Q6DH94 | Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 | 4.39E-19 | |
| TrEMBL | K3ZQS9 | RBR-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101753869 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology