Basic Information
Locus ID:
BH03.1920
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 29388993 | 29390207 | + | BH03.1920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 41,522.93 Da | 49.95 | 73.22 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 166 | 209 | 7.00366E-18 | - |
| Pfam | PF13639 | Ring finger domain | 166 | 209 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 214 | 5.81E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 214 | 9.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 208 | 3.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 404 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 7.21E-46 |
| RefSeq | XP_025802331.1 | RING-H2 finger protein ATL46-like [Panicum hallii] | 3.9E-167 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 7.01E-45 | |
| TrEMBL | A0A1E5VK64 | RING-H2 finger protein ATL46 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013473 PE=4 SV=1 | 1.32E-169 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology