Basic Information
Locus ID:
BH03.1826
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
structural constituent of ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 28486692 | 28488119 | + | BH03.1826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 11,578.42 Da | 26.54 | 89.80 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 73 | 4.1E-28 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 2.76E-29 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 100 | 1.4E-39 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 1.2E-27 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 26.59786 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 7.3E-30 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 7.3E-30 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 7.3E-30 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23410.1 | Ribosomal protein S27a / Ubiquitin family protein. | 4.41E-40 |
| RefSeq | XP_022840962.1 | Ubiquitin supergroup [Ostreococcus tauri] | 6.75E-40 |
| P59271 | Ubiquitin-ribosomal protein eS31z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPS27AA PE=2 SV=2 | 4.26E-39 | |
| TrEMBL | A0A3L6TCK4 | Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G32530 PE=3 SV=1 | 3.69E-39 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH03.1826.