Basic Information
Locus ID:
BH03.150
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 1679545 | 1681836 | - | BH03.150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 45,817.27 Da | 51.05 | 83.02 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 12 | 57 | 7.4E-7 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 110 | 278 | 4.84E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 77 | 4.97E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 56 | 3.4E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 57 | 9.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 56 | 8.676143 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021318649.1 | uncharacterized protein LOC8080290 [Sorghum bicolor] | 8.84E-164 |
| TrEMBL | A0A1Z5RBL1 | DUF1618 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G013600 PE=4 SV=1 | 5.98E-132 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.1122, BH03.150, BH07.1201, CH07.979 |
| Poaceae | Oryza coarctata | 1 | Oco12G012700 |