halophFGD

Basic Information

Locus ID: BH03.142

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH03	1576504	1578030	+	BH03.142

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.26	35,589.97 Da	48.50	83.52	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	8	44	4.9E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	8	63	1.2E-12	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	111	234	5.62E-6	IPR011043
Gene3D	G3DSA:1.20.1280.50	-	5	45	1.1E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039794986.1	uncharacterized protein LOC120660503 [Panicum virgatum]	3.83E-136
TrEMBL	A0A8T0VYQ6	F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG023200 PE=4 SV=1	8.66E-135

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH03.128, BH01.447, BH03.140, BH03.141, BH03.142, BH04.1790 ... CH08.349
Poaceae	Paspalum vaginatum	1	gene-BS78_02G015400