Basic Information
Locus ID:
BH03.1289
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 16893742 | 16929511 | + | BH03.1289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 320,320.44 Da | 55.49 | 77.23 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 2590 | 2718 | 1.48683E-54 | - |
| Pfam | PF04434 | SWIM zinc finger | 1873 | 1896 | 1.9E-6 | IPR007527 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2606 | 2725 | 2.4E-14 | IPR000477 |
| Pfam | PF00069 | Protein kinase domain | 321 | 575 | 2.6E-32 | IPR000719 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2535 | 2719 | 3.11E-68 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 306 | 597 | 5.88E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 394 | 579 | 3.3E-34 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2552 | 2691 | 1.6E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 293 | 393 | 6.3E-25 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 2631 | 2722 | 1.6E-62 | IPR043128 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 2 | 129 | 6.0E-5 | IPR014729 |
| SMART | SM00220 | serkin_6 | 320 | 584 | 7.9E-16 | IPR000719 |
| SMART | SM00575 | 26again6 | 1874 | 1901 | 1.5E-6 | IPR006564 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 762 | 784 | 9.660301 | IPR013087 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 1867 | 1899 | 10.088695 | IPR007527 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 320 | 584 | 30.378925 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 435 | 447 | - | IPR008271 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 764 | 784 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1203 | 1217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2212 | 2248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1192 | 1217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1489 | 1508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2229 | 2244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1328 | 1399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1442 | 1457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2381 | 2430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2412 | 2430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1458 | 1477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1427 | 1483 | - | - |
| Coils | Coil | Coil | 242 | 269 | - | - |
| Coils | Coil | Coil | 965 | 985 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25610.2 | C2H2-like zinc finger protein. | 2.13E-67 |
| RefSeq | XP_004956235.1 | U-box domain-containing protein 33 isoform X2 [Setaria italica] | 0 |
| Q9FKG5 | U-box domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=PUB51 PE=2 SV=2 | 1.15E-46 | |
| TrEMBL | A0A3L6FTY7 | U-box domain-containing protein 33 OS=Zea mays OX=4577 GN=PUB33_5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2285, jg33969 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16141 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g055090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38403, Sbi_jg6510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15407 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006499 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01956, Sgl07112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000443, gene:ENSEOMG00000028832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003060, CQ.Regalona.r1.3BG0003320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182980 |
| Apiaceae | Apium graveolens | 2 | Ag10G02606, Ag2G02026 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010450, COCNU_09G007910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698622, gene-LOC103705525 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2103.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082020.2N, BniB05g011720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1455 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11787, nbisL1-mrna-12618 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010370, Pov_00040982 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03961, Lb1G03962, Lb1G04004 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1126, BH03.1289, BH09.419, CH03.1449, CH03.91 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0331730.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020491, gene-QYE76_040056 |
| Poaceae | Oryza coarctata | 1 | Oco18G012220 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39660.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G134800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700637 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008290, Chr21G008470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G013100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047340, gene_TRIDC4BG001310 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G310700.1, TraesCS4B02G003500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095880_P002, Zm00001eb224460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31801 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32022 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1417, evm.TU.LG11.1643, evm.TU.LG14.699 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05810 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1409, evm.TU.Scaffold_4_RagTag.109 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12700, nbisL1-mrna-29232 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.68, evm.TU.utg000010l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000070, Maker00009070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1089, nbisL1-mrna-2346 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20576, nbisL1-mrna-6291 |
| Salicaceae | Populus euphratica | 2 | populus_peu29301, populus_peu30662 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631933, gene-LOC132639318 |
| Solanaceae | Solanum chilense | 2 | SOLCI002473000, SOLCI004626000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012418 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6434_chr04_+, gene_10808 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2368, TC08G1588 |
| Zosteraceae | Zostera marina | 2 | Zosma01g24230.v3.1, Zosma03g26760.v3.1 |