Basic Information
Locus ID:
BH03.1288
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 16883827 | 16892974 | + | BH03.1288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 171,200.84 Da | 43.25 | 88.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 767 | 1029 | 2.27284E-51 | - |
| CDD | cd01989 | STK_N | 26 | 201 | 8.23135E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 424 | 677 | 6.8E-40 | IPR000719 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1257 | 1339 | 2.6E-22 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 774 | 1028 | 5.9E-46 | IPR000477 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 402 | 679 | 5.26E-64 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 727 | 999 | 9.34E-20 | IPR043502 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 495 | 692 | 2.4E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 393 | 494 | 2.5E-27 | - |
| SMART | SM00220 | serkin_6 | 422 | 689 | 1.9E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 422 | 689 | 32.343552 | IPR000719 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 753 | 1029 | 17.87468 | IPR000477 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 540 | 552 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 324 | 344 | - | - |
| Coils | Coil | Coil | 282 | 316 | - | - |
| Coils | Coil | Coil | 373 | 393 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 4.61E-132 |
| RefSeq | XP_034579922.1 | U-box domain-containing protein 33-like isoform X1 [Setaria viridis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 4.46E-131 | |
| TrEMBL | A0A4U6VQ70 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_2G140900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology