Basic Information
Locus ID:
BH03.1014
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 12998806 | 13006061 | - | BH03.1014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 95,512.79 Da | 66.19 | 53.42 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 366 | 394 | 6.3E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 400 | 426 | 9.0E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 359 | 395 | 2.63E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 358 | 396 | 7.8E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 397 | 429 | 2.8E-9 | - |
| SMART | SM00547 | zf_4 | 368 | 392 | 6.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 401 | 425 | 4.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 399 | 428 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 10.127614 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 403 | 422 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 352 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 8.69E-138 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 8.03E-20 | |
| TrEMBL | A0A8T0VF23 | Zinc finger protein VAR3, chloroplastic OS=Panicum virgatum OX=38727 GN=PVAP13_2NG289200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology