Basic Information
Locus ID:
BH02.700
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 6659429 | 6661272 | + | BH02.700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 35,942.35 Da | 50.26 | 76.50 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 82 | 198 | 1.9E-39 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 80 | 122 | 1.3E-7 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 123 | 196 | 9.5E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 329 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 5.93E-50 |
| RefSeq | XP_039851248.1 | ubiquitin recognition factor in ER-associated degradation protein 1-like [Panicum virgatum] | 2.65E-115 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 5.01E-29 | |
| TrEMBL | A0A8T0SE61 | Ubiquitin fusion degradation protein 1 OS=Panicum virgatum OX=38727 GN=PVAP13_5KG092200 PE=3 SV=1 | 9.14E-112 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology