Basic Information
Locus ID:
BH02.677
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 6444707 | 6448079 | + | BH02.677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 75,784.62 Da | 39.61 | 72.22 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03469 | XH domain | 539 | 668 | 8.7E-54 | IPR005379 |
| Pfam | PF03468 | XS domain | 152 | 263 | 6.5E-20 | IPR005380 |
| Gene3D | G3DSA:3.30.70.2890 | XS domain | 148 | 318 | 1.9E-30 | IPR038588 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 148 | - | - |
| Coils | Coil | Coil | 296 | 344 | - | - |
| Coils | Coil | Coil | 353 | 415 | - | - |
| Coils | Coil | Coil | 480 | 517 | - | - |
| Coils | Coil | Coil | 427 | 471 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15910.1 | XH/XS domain-containing protein. | 2.29E-107 |
| RefSeq | XP_004968205.1 | factor of DNA methylation 1 [Setaria italica] | 0 |
| Q9S9P3 | Factor of DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=FDM1 PE=1 SV=1 | 2.22E-106 | |
| TrEMBL | K3XF43 | Factor of DNA methylation 1 OS=Setaria italica OX=4555 GN=101778142 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_04G016040 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.675, BH02.677, CH02.776 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0009660, gene-QOZ80_1BG0058260 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0251850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041886 |
| Poaceae | Oryza coarctata | 1 | Oco12G005280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g05470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G065500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604099, Pt_Chr0605359 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G023530, Chr03G004270, Chr05G014410, Chr08G000860 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G297600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG022930, gene_TRIDC3BG027120 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G167400.1, TraesCS3B02G198800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124430_P001, Zm00001eb335860_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13017 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7599 |