Basic Information
Locus ID:
BH02.54
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 467667 | 470204 | + | BH02.54 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 44,476.67 Da | 48.63 | 67.57 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 140 | 178 | 9.95529E-14 | - |
| CDD | cd03829 | Sina | 256 | 384 | 4.20031E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 184 | 383 | 5.7E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 183 | 7.07E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 195 | 387 | 2.88E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 194 | 8.1E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 255 | 383 | 8.9E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 250 | 2.7E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 178 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 195 | 255 | 14.185511 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 87 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 2.81E-189 |
| RefSeq | XP_025816186.1 | E3 ubiquitin-protein ligase SINAT5-like [Panicum hallii] | 3.48E-233 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 2.7E-188 | |
| TrEMBL | A0A8T0RIU6 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_5NG006200 PE=3 SV=1 | 8.36E-235 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology