Basic Information
Locus ID:
BH02.509
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 4957385 | 4961955 | + | BH02.509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 85,327.58 Da | 59.19 | 67.93 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 161 | 191 | 1.17211E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 508 | 637 | 7.51531E-63 | - |
| Pfam | PF00397 | WW domain | 160 | 190 | 1.5E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 313 | 483 | 2.5E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 520 | 628 | 2.1E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 361 | 644 | 2.27E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 155 | 192 | 7.63E-9 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 262 | 497 | 9.1E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 498 | 670 | 1.2E-59 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 156 | 197 | 3.7E-6 | - |
| SMART | SM00487 | ultradead3 | 308 | 511 | 1.0E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 548 | 628 | 3.2E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 159 | 192 | 2.3E-7 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 523 | 667 | 25.989883 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 320 | 494 | 31.48385 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 158 | 192 | 11.7036 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 289 | 317 | 10.848828 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 440 | 448 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 164 | 190 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 786 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 2.86E-265 |
| RefSeq | XP_004968357.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X2 [Setaria italica] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 5.65E-309 | |
| TrEMBL | A0A2T7DRR0 | DEAD-box ATP-dependent RNA helicase 14 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G495500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology