Basic Information
Locus ID:
BH02.498
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 4865307 | 4870825 | - | BH02.498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 164,505.16 Da | 41.15 | 103.25 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 644 | 844 | 4.42754E-111 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 948 | 1242 | 5.94323E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 331 | 618 | 1.4223E-96 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1265 | 1485 | 1.93815E-120 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 950 | 1191 | 1.3E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1284 | 1432 | 3.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 334 | 597 | 3.0E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 662 | 796 | 7.3E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 936 | 1248 | 6.41E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1497 | 1.78E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 320 | 618 | 3.92E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 641 | 866 | 3.03E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 629 | 876 | 1.5E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1250 | 1503 | 1.4E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1248 | 7.6E-64 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 309 | 626 | 7.5E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 671 | 844 | 1.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1293 | 1484 | 4.4E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 330 | 610 | 30.572611 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 644 | 867 | 23.00931 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1267 | 1501 | 17.040285 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 950 | 1230 | 36.946106 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 769 | 783 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 899 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596584.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UFR8 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_5G119400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology