Basic Information
Locus ID:
BH02.4720
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 51124724 | 51132005 | + | BH02.4720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 88,251.57 Da | 52.60 | 79.17 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02604 | HAD_5NT | 541 | 757 | 4.13947E-72 | IPR010237 |
| CDD | cd00200 | WD40 | 210 | 469 | 5.98621E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 339 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 384 | 5.1E-4 | IPR001680 |
| Pfam | PF13242 | HAD-hyrolase-like | 712 | 765 | 3.1E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 469 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 470 | 1.56E-58 | IPR036322 |
| SUPERFAMILY | SSF56784 | HAD-like | 540 | 781 | 6.64E-28 | IPR036412 |
| Gene3D | G3DSA:2.130.10.10 | - | 165 | 473 | 9.0E-121 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1000 | - | 603 | 782 | 3.7E-43 | IPR023214 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 0.098 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 384 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 296 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 469 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 213 | 210.0 | IPR001680 |
| TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 709 | 755 | 8.2E-10 | IPR006439 |
| TIGRFAM | TIGR01993 | Pyr-5-nucltdase: pyrimidine 5'-nucleotidase | 540 | 755 | 5.5E-65 | IPR010237 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 437 | 470 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 437 | 470 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 339 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 393 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 456 | 470 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 175 | - | - |
| SFLD | SFLDG01132 | C1.5.3: 5'-Nucleotidase Like | 538 | 787 | 0.0 | IPR010237 |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 538 | 787 | 0.0 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 1.25E-235 |
| RefSeq | XP_034595902.1 | protein FIZZY-RELATED 3 [Setaria viridis] | 5.37E-303 |
| Q8LPL5 | Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=FZR3 PE=1 SV=1 | 1.2E-234 | |
| TrEMBL | A0A0E0CDJ9 | WD_REPEATS_REGION domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology