Basic Information
Locus ID:
BH02.4533
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 49839832 | 49845339 | - | BH02.4533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 87,291.99 Da | 33.64 | 86.51 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 508 | 818 | 3.6E-99 | IPR000490 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 91 | 353 | 2.4E-78 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 356 | 409 | 1.05E-5 | IPR023400 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 508 | 818 | 1.37E-90 | IPR017853 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 340 | 4.54E-40 | IPR027417 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 508 | 818 | 7.7E-122 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 117 | 431 | 9.5E-90 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 118 | 276 | 26.166567 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 282 | 358 | 16.64286 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 247 | 276 | 1.5E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 209 | 238 | 1.5E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 176 | 205 | 1.5E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 295 | 323 | 1.5E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 382 | 399 | 1.5E-44 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 329 | 358 | 1.5E-44 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 3.15E-114 |
| RefSeq | XP_034585641.1 | DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Setaria viridis] | 4.21E-258 |
| P15737 | Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare OX=4513 PE=1 SV=1 | 2.53E-121 | |
| TrEMBL | A0A1E5WK67 | Glucan endo-1,3-beta-glucosidase GII OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0001203 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology