Basic Information
Locus ID:
BH02.4476
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 49389340 | 49390128 | - | BH02.4476 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 28,041.62 Da | 50.77 | 72.33 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 174 | 231 | 2.8E-12 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 237 | 2.21E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 245 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 230 | 1.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 231 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025819298.1 | uncharacterized protein LOC112895548 [Panicum hallii] | 2.49E-94 |
| TrEMBL | A0A3L6STZ4 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G33970 PE=4 SV=1 | 1.67E-95 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH02.4430, AH02.4436, BH02.4470, BH02.4476, CH02.4517 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395500 |
| Poaceae | Zea mays | 7 | Zm00001eb141740_P001, Zm00001eb141780_P001 ... |