Basic Information
Locus ID:
BH02.4465
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 49329603 | 49332979 | - | BH02.4465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 48,974.44 Da | 56.92 | 74.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 348 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 299 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 100 | 426 | 3.36E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 432 | 4.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 9.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 86 | 123 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 348 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 217 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 200.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 3.03E-180 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 3.78E-259 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 2.91E-179 | |
| TrEMBL | K3XHQ6 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1 | 8.54E-258 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology