Basic Information
Locus ID:
BH02.4344
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 48306021 | 48306923 | - | BH02.4344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 32,300.68 Da | 79.09 | 52.20 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 252 | 289 | 4.42911E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 251 | 295 | 9.4E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 296 | 6.83E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 300 | 2.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 252 | 289 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 252 | 290 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 2.55E-25 |
| RefSeq | XP_008656941.1 | uncharacterized protein LOC103636359 [Zea mays] | 6.03E-92 |
| TrEMBL | A0A1E5VXQ1 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009104 PE=4 SV=1 | 7.45E-93 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology