Basic Information
Locus ID:
BH02.4333
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 48232290 | 48235855 | - | BH02.4333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 73,721.09 Da | 56.81 | 60.98 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 204 | 245 | 3.1207E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 80 | 7.7E-21 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 268 | 1.94E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 277 | 3.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 6.6E-19 | - |
| SMART | SM01180 | DWNN_2 | 4 | 81 | 1.6E-24 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 81 | 14.454437 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 563 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 4.1E-30 |
| RefSeq | XP_025818471.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Panicum hallii] | 1.02E-297 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 7.21E-29 | |
| TrEMBL | A0A2S3HNQ3 | DWNN domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G044200 PE=4 SV=1 | 2.32E-296 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology