Basic Information
Locus ID:
BH02.4005
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 45501502 | 45502185 | + | BH02.4005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 23,817.98 Da | 58.40 | 84.32 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 144 | 187 | 1.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 191 | 2.04E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 189 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 145 | 186 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 187 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 127 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18773.1 | RING/U-box superfamily protein. | 5.48E-27 |
| RefSeq | XP_034597351.1 | RING-H2 finger protein ATL73-like [Setaria viridis] | 2.41E-94 |
| Q9LS99 | RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1 | 5.33E-26 | |
| TrEMBL | A0A4U6UNL1 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G398300v2 PE=4 SV=1 | 5.45E-93 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3986, BH02.4005, CH02.4034 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041010, gene-QOZ80_1BG0091050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299850.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025750, Oco02G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G347700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003800, Chr08G021400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G601700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G377100.1.cds1, TraesCS3B02G409700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb146800_P001, Zm00001eb366740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11275, nbis-gene-28641 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11613, Zma_g9073 |