Basic Information
Locus ID:
BH02.4003
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 45483103 | 45484326 | - | BH02.4003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 42,905.18 Da | 55.86 | 108.21 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 57 | 7.60193E-18 | - |
| Pfam | PF04564 | U-box domain | 8 | 82 | 2.8E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 81 | 2.02E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 113 | 373 | 2.3E-19 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | 3.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 221 | 1.1E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 224 | 387 | 2.2E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 11 | 79 | 1.4E-25 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 271 | 314 | 9.8174 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 86 | 33.588886 | IPR003613 |
| Coils | Coil | Coil | 113 | 140 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 2.93E-92 |
| RefSeq | XP_025818643.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 1.42E-255 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 2.82E-91 | |
| TrEMBL | A0A3L6RLF9 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM13G14360 PE=4 SV=1 | 7.87E-255 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology