Basic Information
Locus ID:
BH02.3901
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 44612078 | 44615845 | - | BH02.3901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 34,654.97 Da | 45.51 | 65.03 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 207 | 259 | 3.81884E-11 | - |
| Pfam | PF12906 | RING-variant domain | 207 | 258 | 7.8E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 261 | 6.71E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 266 | 1.9E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 206 | 259 | 2.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 199 | 265 | 16.897436 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 157 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 6.85E-56 |
| RefSeq | XP_039849978.1 | uncharacterized protein LOC120708669 [Panicum virgatum] | 2.99E-136 |
| TrEMBL | A0A3L6SGH1 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G28680 PE=4 SV=1 | 1.62E-138 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology