Basic Information
Locus ID:
BH02.3871
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 44354898 | 44355482 | - | BH02.3871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 20,130.21 Da | 42.52 | 80.05 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 75 | 117 | 2.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 120 | 1.44E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 129 | 3.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 116 | 4.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 117 | 12.622055 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034594772.1 | E3 ubiquitin-protein ligase RNF43-like [Setaria viridis] | 2.39E-95 |
| Q91XF4 | E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1 | 1.65E-8 | |
| TrEMBL | A0A368RD35 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_5G378900v2 PE=4 SV=1 | 3.13E-95 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3846, BH02.3871, BH07.4174 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0039620, gene-QOZ80_1BG0089640 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056322 |
| Poaceae | Oryza coarctata | 2 | Oco01G024730, Oco02G025630 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g62640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G333700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr02G004860 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G578200, Tel5E01G810000 |
| Poaceae | Triticum aestivum | 3 | TraesCS3B02G394000.1.cds1, TraesCS5B02G522800.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25470, nbis-gene-27021 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24860 |