Basic Information
Locus ID:
BH02.379
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 3722137 | 3726140 | - | BH02.379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 44,340.19 Da | 49.80 | 78.18 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 280 | 9.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 127 | 159 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 319 | 3.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 122 | 410 | 1.46E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 109 | 177 | 3.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 413 | 3.7E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 371 | 408 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 159 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 320 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 280 | 6.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 236 | 9.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 127 | 168 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 281 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 127 | 159 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 329 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 289 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 146 | 160 | 6.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 6.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 6.0E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 1.86E-70 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 2.16E-220 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 2.8E-93 | |
| TrEMBL | A0A3L6SKU6 | Zinc finger CCCH domain-containing protein 17-like OS=Panicum miliaceum OX=4540 GN=C2845_PM07G37190 PE=4 SV=1 | 1.12E-219 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology