Basic Information
Locus ID:
BH02.3642
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Tub family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 42536074 | 42540123 | + | BH02.3642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.39 | 61,349.29 Da | 79.40 | 70.67 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01167 | Tub family | 417 | 507 | 1.5E-24 | IPR000007 |
| Pfam | PF00646 | F-box domain | 354 | 395 | 1.8E-4 | IPR001810 |
| Pfam | PF01167 | Tub family | 508 | 564 | 7.7E-23 | IPR000007 |
| SUPERFAMILY | SSF81383 | F-box domain | 344 | 396 | 4.19E-6 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 405 | 570 | 2.07E-44 | IPR025659 |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 507 | 570 | 1.1E-24 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 349 | 401 | 1.0E-5 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 410 | 506 | 8.6E-21 | IPR025659 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 555 | 570 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 498 | 514 | 2.7E-20 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 548 | 570 | 2.7E-20 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 527 | 546 | 2.7E-20 | IPR000007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 287 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53320.1 | tubby like protein 7. Member of TLP family | 2.84E-69 |
| RefSeq | XP_004970029.1 | tubby-like F-box protein 2 [Setaria italica] | 3.45E-144 |
| Q68Y48 | Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP9 PE=2 SV=1 | 4.5E-99 | |
| TrEMBL | K3XJ41 | Tubby-like F-box protein OS=Setaria italica OX=4555 GN=101768018 PE=3 SV=1 | 7.81E-143 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.3642, BH05.653, CH02.3178 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr08G016700 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31125 |