Basic Information
Locus ID:
BH02.3585
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 42129906 | 42130580 | + | BH02.3585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 23,895.84 Da | 47.39 | 71.88 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 25 | 69 | 3.20584E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 26 | 67 | 6.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 80 | 1.27E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 81 | 3.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 13.389211 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 2.27E-78 |
| RefSeq | XP_004970087.1 | E3 ubiquitin-protein ligase RNF5 [Setaria italica] | 1.03E-155 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 2.55E-34 | |
| TrEMBL | A0A3L6R1B0 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM08G26530 PE=4 SV=1 | 5.01E-155 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology