Basic Information
Locus ID:
BH02.3435
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Breast carcinoma amplified sequence 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 40929935 | 40939820 | + | BH02.3435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 255,656.88 Da | 47.55 | 77.59 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1687 | 1801 | 4.53877E-43 | - |
| CDD | cd01647 | RT_LTR | 1419 | 1594 | 3.89427E-84 | - |
| CDD | cd00303 | retropepsin_like | 1383 | 1452 | 6.49893E-7 | - |
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 511 | 746 | 2.0E-68 | IPR022175 |
| Pfam | PF17921 | Integrase zinc binding domain | 1870 | 1919 | 2.3E-13 | IPR041588 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1656 | 1750 | 2.6E-27 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1435 | 1594 | 6.5E-31 | IPR000477 |
| Pfam | PF00665 | Integrase core domain | 1939 | 2033 | 1.5E-8 | IPR001584 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1433 | 1786 | 2.33E-138 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1931 | 2092 | 3.19E-42 | IPR012337 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 2201 | 2274 | 9.16E-10 | IPR016197 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 460 | 3.43E-17 | IPR036322 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1433 | 1519 | 1.5E-71 | - |
| Gene3D | G3DSA:1.10.340.70 | - | 1837 | 1918 | 5.4E-11 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 77 | 497 | 1.2E-12 | IPR015943 |
| Gene3D | G3DSA:3.30.70.270 | - | 1459 | 1594 | 1.5E-71 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1603 | 1691 | 3.8E-29 | IPR043128 |
| Gene3D | G3DSA:2.40.50.40 | - | 2238 | 2283 | 2.1E-5 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1928 | 2128 | 3.6E-51 | IPR036397 |
| SMART | SM00320 | WD40_4 | 184 | 219 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 458 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 401 | 6.7E-4 | IPR001680 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1930 | 2092 | 20.571802 | IPR001584 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1415 | 1594 | 14.123362 | IPR000477 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 2235 | 2268 | 10.838001 | IPR000953 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 1394 | 1405 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 864 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 879 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03380.1 | homolog of yeast autophagy 18 (ATG18) G. | 2.92E-132 |
| RefSeq | XP_039849446.1 | autophagy-related protein 18f-like [Panicum virgatum] | 0 |
| Q8GUL1 | Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=1 | 2.83E-131 | |
| TrEMBL | A0A1E5WM38 | Autophagy-related protein 18h OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000497 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19400, jg24525, jg38342 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008510 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009659, gene:ENSEOMG00000027663 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0021370, CQ.Regalona.r1.4BG0022250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30157910 |
| Apiaceae | Apium graveolens | 1 | Ag9G00938 |
| Arecaceae | Cocos nucifera | 2 | scaffold001175G000020, scaffold004783G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696161, gene-LOC103714838 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.937.V1.1, AsparagusV1_07.3899.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G12168, Ftri2G25341 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012811m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g033320.2N, BniB05g034640.2N, BniB08g015770.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1232 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1371 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g03940, gene.Thate05g23080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031598 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G08028, Lb2G10821, Lb2G10825 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3519, BH02.3435, CH02.2978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036130, gene-QOZ80_1BG0086130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294310.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056034, gene-QYE76_056075 |
| Poaceae | Oryza coarctata | 2 | Oco01G022160, Oco02G022730 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57720.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G301100, gene-BS78_K023100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601671, Pt_Chr0601684 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G007660, Chr03G017820, Chr05G025890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G517300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046640, gene_TRIDC3BG053010 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G324900.2, TraesCS3B02G353900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb151200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31286 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11304 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2016, evm.TU.LG14.1200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.432, evm.TU.Scaffold_9_RagTag.300 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22028 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5313, nbisL1-mrna-5976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10396, nbisL1-mrna-7197 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.366, evm.TU.utg000006l.470 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009361, Maker00014108 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12635 |
| Salicaceae | Populus euphratica | 3 | populus_peu00382, populus_peu17420, populus_peu17421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618914 |
| Solanaceae | Solanum chilense | 2 | SOLCI000270200, SOLCI003875700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007709, gene-LOC107026162 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24835_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2859 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31800.v3.1 |