Basic Information
Locus ID:
BH02.3424
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 40859485 | 40860289 | + | BH02.3424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 25,384.84 Da | 57.98 | 85.18 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 16 | 62 | 1.4E-12 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 181 | 5.23E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 63 | 6.67E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 199 | 7.3E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 61 | 1.6E-13 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 60 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039851792.1 | uncharacterized protein LOC120710205 [Panicum virgatum] | 4.41E-96 |
| TrEMBL | A0A8T0SVI6 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG575700 PE=4 SV=1 | 9.97E-95 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3531, AH08.564, BH02.3424, BH08.2212, BH08.597 ... |
| Poaceae | Eleusine coracana subsp. coracana | 15 | gene-QOZ80_1AG0007090, gene-QOZ80_1BG0050140 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319820.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_009231, gene-QYE76_009232, gene-QYE76_009233 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0205788, Pt_Chr0205789, Pt_Chr0207610, Pt_Chr0207611 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G001670, Chr20G010470 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G785300, Tel6E01G283500, Tel7E01G327200 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG018010 |
| Poaceae | Triticum aestivum | 5 | TraesCS3B02G537900.1, TraesCS3B02G538000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb386420_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-31300, nbis-gene-38896, nbis-gene-48553 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11315, Zma_g15927 |