Basic Information
Locus ID:
BH02.3376
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 40454344 | 40461874 | - | BH02.3376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 129,245.95 Da | 45.74 | 79.29 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09076 | L1-EN | 318 | 525 | 1.22085E-28 | - |
| Pfam | PF00288 | GHMP kinases N terminal domain | 178 | 231 | 6.9E-6 | IPR006204 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 751 | 908 | 1.3E-22 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 750 | 969 | 2.54E-8 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 329 | 512 | 5.58E-13 | IPR036691 |
| SUPERFAMILY | SSF55060 | GHMP Kinase, C-terminal domain | 1048 | 1091 | 7.19E-5 | IPR036554 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 95 | 247 | 7.59E-37 | IPR020568 |
| Gene3D | G3DSA:3.30.70.890 | - | 1036 | 1094 | 3.0E-5 | IPR036554 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 316 | 526 | 1.9E-22 | IPR036691 |
| Gene3D | G3DSA:3.30.70.270 | - | 750 | 883 | 1.4E-7 | IPR043128 |
| Gene3D | G3DSA:3.30.230.10 | - | 77 | 249 | 8.9E-53 | IPR014721 |
| TIGRFAM | TIGR00154 | ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | 94 | 313 | 7.6E-49 | IPR004424 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 626 | 910 | 13.364898 | IPR000477 |
| Hamap | MF_00061 | Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. | 93 | 366 | 24.215704 | IPR004424 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 48 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26930.1 | 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. | 9.56E-121 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 5.04E-268 |
| Q8S2G0 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPE PE=2 SV=1 | 1.72E-155 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |