Basic Information
Locus ID:
BH02.3248
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 39292230 | 39292697 | - | BH02.3248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 14,674.37 Da | 60.05 | 72.64 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 155 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004972235.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 9.66E-17 |
| TrEMBL | A0A1E5V3V8 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019152 PE=4 SV=1 | 5.05E-33 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3710, BH02.3248, CH02.3997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038210, gene-QOZ80_1BG0088200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055654 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G319900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G027310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G548500, Tel3E01G552500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049770, gene_TRIDC3BG056070 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G345400.1.cds1, TraesCS3B02G377500.1.cds1 ... |