Basic Information
Locus ID:
BH02.3114
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 37972721 | 37977526 | + | BH02.3114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 87,418.35 Da | 56.92 | 76.36 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 647 | 680 | 0.096 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 564 | 596 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 474 | 781 | 3.27E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 35 | 251 | 6.05E-13 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 35 | 255 | 5.1E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 448 | 785 | 5.1E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 744 | 783 | 6.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 638 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 465 | 503 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 728 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 680 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 596 | 1.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 649 | 682 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 649 | 682 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 605 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 243 | 10.690265 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 598 | 10.205597 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 583 | 597 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 667 | 681 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 583 | 597 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 667 | 681 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 540 | 554 | 2.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 246 | 276 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 1.6E-281 |
| RefSeq | XP_039848881.1 | protein SPA1-RELATED 4-like [Panicum virgatum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 1.54E-280 | |
| TrEMBL | A0A2T7DHB6 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G174900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology