Basic Information
Locus ID:
BH02.3076
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 37720140 | 37723100 | - | BH02.3076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 34,058.83 Da | 39.64 | 68.44 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 61 | 142 | 1.3E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 196 | 239 | 6.4E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 244 | 300 | 7.6E-19 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 244 | 3.53E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 58 | 132 | 4.45E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 133 | 190 | 1.31E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 242 | 8.4E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 266 | 302 | 1.3E-18 | - |
| SMART | SM00184 | ring_2 | 197 | 239 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 240 | 11.913911 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 132 | 196 | 34.45705 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 54 | 130 | 25.837679 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 8.78E-144 |
| RefSeq | XP_021311671.1 | E3 ubiquitin-protein ligase MIEL1-like [Sorghum bicolor] | 8.86E-213 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 9.36E-185 | |
| TrEMBL | A0A1B6Q5R2 | CHY-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G278500 PE=4 SV=1 | 2.0E-211 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology