Basic Information
Locus ID:
BH02.299
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 2941478 | 2954773 | - | BH02.299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 127,327.25 Da | 58.33 | 76.83 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12441 | RRM_Nup53_like | 1002 | 1066 | 6.80115E-26 | - |
| Pfam | PF05172 | Nup53/35/40-type RNA recognition motif | 1002 | 1075 | 5.0E-15 | IPR007846 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 568 | 650 | 1.5E-23 | IPR007021 |
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 889 | 957 | 2.4E-14 | IPR008906 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1002 | 1067 | 1.31E-8 | IPR035979 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 562 | 960 | 1.52E-56 | IPR012337 |
| Gene3D | G3DSA:3.30.70.330 | - | 1000 | 1065 | 1.6E-17 | IPR012677 |
| ProSiteProfiles | PS51472 | RNA-recognition motif (RRM) Nup35-type domain profile. | 991 | 1072 | 20.083839 | IPR007846 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 83 | - | - |
| Coils | Coil | Coil | 460 | 480 | - | - |
| Coils | Coil | Coil | 355 | 375 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16310.1 | mitotic phosphoprotein N' end (MPPN) family protein. | 1.11E-39 |
| RefSeq | XP_002450438.2 | uncharacterized protein LOC8079746 [Sorghum bicolor] | 0 |
| O04326 | Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1 | 1.07E-38 | |
| TrEMBL | A0A0A9IZD4 | DUF659 domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 3.59E-262 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology