Basic Information
Locus ID:
BH02.2643
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 33625358 | 33626232 | + | BH02.2643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.90 | 28,581.49 Da | 55.97 | 84.13 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 95 | 219 | 6.6E-21 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 97 | 253 | 1.96E-18 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 77 | 176 | 9.3E-8 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 177 | 271 | 1.5E-32 | IPR016139 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 87 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039853297.1 | protein synthesis inhibitor II-like [Panicum virgatum] | 1.32E-82 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 1.51E-45 | |
| TrEMBL | A0A835A1U0 | rRNA N-glycosylase OS=Digitaria exilis OX=1010633 GN=HU200_066518 PE=3 SV=1 | 9.14E-90 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology