Basic Information
Locus ID:
BH02.263
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 2616904 | 2635590 | - | BH02.263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 232,809.72 Da | 43.76 | 78.81 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1 | 106 | 4.14315E-49 | - |
| CDD | cd06222 | RNase_H_like | 1191 | 1313 | 1.64236E-27 | IPR044730 |
| CDD | cd09279 | RNase_HI_like | 168 | 292 | 1.17838E-44 | - |
| Pfam | PF00281 | Ribosomal protein L5 | 1943 | 1996 | 1.8E-19 | IPR031310 |
| Pfam | PF00673 | ribosomal L5P family C-terminus | 2000 | 2098 | 5.6E-19 | IPR031309 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 18 | 106 | 1.5E-14 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1192 | 1314 | 2.9E-21 | IPR002156 |
| Pfam | PF13456 | Reverse transcriptase-like | 172 | 291 | 2.8E-23 | IPR002156 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1702 | 1738 | 4.0E-5 | IPR001680 |
| Pfam | PF17921 | Integrase zinc binding domain | 406 | 456 | 7.0E-7 | IPR041588 |
| SUPERFAMILY | SSF55282 | RL5-like | 1942 | 2107 | 2.05E-55 | IPR022803 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 281 | 4.0E-50 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1188 | 1318 | 3.79E-10 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 471 | 522 | 2.47E-6 | IPR012337 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1422 | 1786 | 4.88E-34 | IPR036322 |
| Gene3D | G3DSA:3.30.420.10 | - | 465 | 552 | 2.3E-8 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2 | 31 | 9.8E-28 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 169 | 299 | 1.0E-29 | IPR036397 |
| Gene3D | G3DSA:2.130.10.10 | - | 1400 | 1627 | 6.0E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1639 | 1802 | 4.1E-11 | IPR015943 |
| Gene3D | G3DSA:3.30.420.10 | - | 1188 | 1319 | 7.1E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.1440.10 | - | 1935 | 2111 | 8.7E-72 | IPR022803 |
| Gene3D | G3DSA:1.10.340.70 | - | 366 | 455 | 8.4E-12 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 32 | 106 | 9.8E-28 | IPR043128 |
| SMART | SM00320 | WD40_4 | 1508 | 1546 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1696 | 1738 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1419 | 1460 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1549 | 1590 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1463 | 1502 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 164 | 293 | 12.261727 | IPR002156 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 106 | 8.937115 | IPR000477 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1703 | 1738 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1703 | 1747 | 13.348998 | IPR001680 |
| ProSitePatterns | PS00358 | Ribosomal protein L5 signature. | 1973 | 1989 | - | IPR020929 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1666 | 1691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1847 | 1886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1851 | 1877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1671 | 1691 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45760.1 | Transducin/WD40 repeat-like superfamily protein. | 2.26E-130 |
| RefSeq | XP_025814013.1 | WD repeat-containing protein 53 isoform X1 [Panicum hallii] | 1.98E-238 |
| A2YDY2 | Large ribosomal subunit protein uL5 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2 | 1.89E-111 | |
| TrEMBL | A0A5J9UHM8 | Rho_N domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32505 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22166 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_458 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017019 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40382, Sbi_jg50380 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011526 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45527, Sgl50300 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008687, gene:ENSEOMG00000032055 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0007320 |
| Apiaceae | Apium graveolens | 1 | Ag11G04857 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721690 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1788.V1.1, AsparagusV1_01.1789.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G06362 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000923m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g028380.2N, BniB04g016060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1338 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1490 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.791 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038386 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.263, CH02.302 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002580, gene-QOZ80_1BG0051140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0243230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051039 |
| Poaceae | Oryza coarctata | 1 | Oco01G004610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g10790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G024300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205167, Pt_Chr0205210 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G027840, Chr05G005600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G231100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG017670, gene_TRIDC3BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G137100.1, TraesCS3B02G155000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120830_P005 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9597 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1669 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17780 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30751 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14418 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20960 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015608 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5922 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16844 |
| Salicaceae | Populus euphratica | 2 | populus_peu18006, populus_peu18008 |
| Solanaceae | Solanum chilense | 1 | SOLCI002538600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011204 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10597 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0407 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21170.v3.1 |