Basic Information
Locus ID:
BH02.2407
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 31101606 | 31103914 | - | BH02.2407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 34,641.80 Da | 53.57 | 88.45 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 56 | 106 | 3.62935E-21 | - |
| Pfam | PF12906 | RING-variant domain | 56 | 106 | 3.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 111 | 1.22E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 120 | 1.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 55 | 107 | 3.7E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 48 | 113 | 21.825356 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 1.15E-144 |
| RefSeq | XP_004969138.1 | uncharacterized protein LOC101755158 [Setaria italica] | 8.95E-201 |
| TrEMBL | K3XKC1 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101755158 PE=4 SV=1 | 2.02E-199 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology